Day: October 19, 2019

search

Sequence search The protein sequence search tool does not predict interactions, but rather provides a convenient means of querying for a set …

families

The Family page contains 5 tabs: Summary, Family interactions, Ligand interactions, Structures and Download. Below is a brief description of each section: …

ligands

Summary The ligand summary tab contains more structured data than the family page. The table in the summary tab includes the ligand …

interactions

Structures The structures tab contains a table listing all structures containing an interaction between the two selected interacting-partners. This table contains the …

structures

Overview The iPfam structure page offers visualization via JSmol of all structures that are available in the database. For each structure, the protein …

General

Layout There are three main entry points to the iPfam data: a protein family, a ligand or a protein structure. At the top …

About

iPfam is a resource that describes physical interactions between protein families (currently just Pfam) that have a known structure in the Protein DataBank (PDB). When …