Browse: Families

Entries beginning with R
Name Accession Description Number Interacting Families Number Interacting Ligands Number Structures
R-HINP1I PF11463 R.HinP1I restriction endonuclease 1 3 5
R3H PF01424 R3H domain 4 2 6
R3H-assoc PF13902 R3H-associated N-terminal domain 0 0 0
RA PF00788 Ras association (RalGDS/AF-6) domain 4 5 22
Rab15_effector PF15208 Rab15 effector 0 0 0
Rab3-GTPase_cat PF13890 Rab3 GTPase-activating protein catalytic subunit 0 0 0
RAB3GAP2_C PF14656 Rab3 GTPase-activating protein regulatory subunit C-terminus 0 0 0
RAB3GAP2_N PF14655 Rab3 GTPase-activating protein regulatory subunit N-terminus 0 0 0
Rab5-bind PF09311 Rabaptin-like protein 3 2 5
Rab5ip PF07019 Rab5-interacting protein (Rab5ip) 0 0 0
Rabaptin PF03528 Rabaptin 2 1 1
RabGAP-TBC PF00566 Rab-GTPase-TBC domain 2 7 11
RabGGT_insert PF07711 Rab geranylgeranyl transferase alpha-subunit, insert domain 3 0 2
Rab_eff_C PF04698 Rab effector MyRIP/melanophilin C-terminus 0 0 0
Rac1 PF09632 Rac1-binding domain 1 0 2
Racemase_4 PF13615 Putative alanine racemase 0 0 0
Rad1 PF02144 Repair protein Rad1/Rec1/Rad17 2 1 3
Rad10 PF03834 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) 0 1 3
Rad17 PF03215 Rad17 cell cycle checkpoint protein 0 0 0
Rad21_Rec8 PF04824 Conserved region of Rad21 / Rec8 like protein 1 0 1
Rad21_Rec8_N PF04825 N terminus of Rad21 / Rec8 like protein 0 0 0
Rad33 PF08730 Rad33 0 0 0
Rad4 PF03835 Rad4 transglutaminase-like domain 2 3 6
Rad50_zn_hook PF04423 Rad50 zinc hook motif 1 2 1
Rad51 PF08423 Rad51 3 26 50
Rad52_Rad22 PF04098 Rad52/22 family double-strand break repair protein 1 0 2
Rad54_N PF08658 Rad54 N terminal 1 1 1
Rad60-SLD PF11976 Ubiquitin-2 like Rad60 SUMO-like 9 6 46
Rad60-SLD_2 PF13881 Ubiquitin-2 like Rad60 SUMO-like 0 0 3
Rad9 PF04139 Rad9 2 0 3
Rad9_Rad53_bind PF08605 Fungal Rad9-like Rad53-binding 0 0 0
RadC PF04002 RadC-like JAB domain 1 0 1
Radial_spoke PF04712 Radial spokehead-like protein 0 0 0
Radial_spoke_3 PF06098 Radial spoke protein 3 0 0 0
Radical_SAM PF04055 Radical SAM superfamily 9 28 31
Radical_SAM_N PF08497 Radical SAM N-terminal 0 0 0
Raffinose_syn PF05691 Raffinose synthase or seed imbibition protein Sip1 0 0 0
Raftlin PF15250 Raftlin 0 0 0
RAG1 PF12940 Recombination-activation protein 1 (RAG1) 0 0 0
RAG2 PF03089 Recombination activating protein 2 0 0 0
RAG2_PHD PF13341 RAG2 PHD domain 1 6 7
RAI1 PF08652 RAI1 like PD-(D/E)XK nuclease 1 8 9
RAI16-like PF10257 Retinoic acid induced 16-like protein 0 0 0
Ral PF11058 Antirestriction protein Ral 0 0 0
RALF PF05498 Rapid ALkalinization Factor (RALF) 0 0 0
RAM PF15320 mRNA cap methylation, RNMT-activating mini protein 0 0 0
RAMP PF04901 Receptor activity modifying family 2 5 7
RAMP4 PF06624 Ribosome associated membrane protein RAMP4 0 0 0
RAMPs PF03787 RAMP superfamily 0 0 0
Ran-binding PF05508 RanGTP-binding protein 0 0 0
RanGAP1_C PF07834 RanGAP1 C-terminal domain 4 2 13
Ran_BP1 PF00638 RanBP1 domain 3 4 25
RAP PF08373 RAP domain 0 0 0
RAP-1 PF03085 Rhoptry-associated protein 1 (RAP-1) 0 0 0
RAP1 PF07218 Rhoptry-associated protein 1 (RAP-1) 0 0 0
Rap1-DNA-bind PF09197 Rap1, DNA-binding 0 1 3
Rap1_C PF11626 TRF2-interacting telomeric protein/Rap1 - C terminal domain 1 3 6
Rapamycin_bind PF08771 Rapamycin binding domain 2 4 18
RapA_C PF12137 RNA polymerase recycling family C-terminal 3 1 1
Rapsyn_N PF10579 Rapsyn N-terminal myristoylation and linker region 0 0 0
Raptor_N PF14538 Raptor N-terminal CASPase like domain 0 0 0
Rap_GAP PF02145 Rap/ran-GAP 2 3 2
Ras PF00071 Ras family 65 74 473
RasGAP PF00616 GTPase-activator protein for Ras-like GTPase 2 3 5
RasGAP_C PF03836 RasGAP C-terminus 1 1 4
RasGEF PF00617 RasGEF domain 6 6 18
RasGEF_N PF00618 RasGEF N-terminal motif 4 1 14
RasGEF_N_2 PF14663 Rapamycin-insensitive companion of mTOR RasGEF_N domain 0 0 0
Ras_bdg_2 PF14847 Ras-binding domain of Byr2 1 0 2
Rav1p_C PF12234 RAVE protein 1 C terminal 0 0 0
Rax2 PF12768 Cortical protein marker for cell polarity 0 0 0
RBB1NT PF08169 RBB1NT (NUC162) domain 0 0 1
RbcS PF12338 Ribulose-1,5-bisphosphate carboxylase small subunit 0 0 0
RBD PF02196 Raf-like Ras-binding domain 2 2 10
RBD-FIP PF09457 FIP domain 2 4 6
RBDV_coat PF06593 Raspberry bushy dwarf virus coat protein 0 0 0
RBFA PF02033 Ribosome-binding factor A 1 0 7
RBM1CTR PF08081 RBM1CTR (NUC064) family 0 0 0
RBM39linker PF15519 linker between RRM2 and RRM3 domains in RBM39 protein 1 1 2
RBP_receptor PF14752 Retinol binding protein receptor 0 0 0
RbsD_FucU PF05025 RbsD / FucU transport protein family 1 11 12
Rbsn PF11464 Rabenosyn Rab binding domain 1 7 9
RB_A PF01858 Retinoblastoma-associated protein A domain 5 2 9
RB_B PF01857 Retinoblastoma-associated protein B domain 4 0 8
Rb_C PF08934 Rb C-terminal domain 7 0 11
RC-P840_PscD PF10657 Photosystem P840 reaction centre protein PscD 0 0 0
RcbX PF02341 RbcX protein 3 7 17
RCC1 PF00415 Regulator of chromosome condensation (RCC1) repeat 2 3 10
RCC1_2 PF13540 Regulator of chromosome condensation (RCC1) repeat 2 2 3
RCC_reductase PF06405 Red chlorophyll catabolite reductase (RCC reductase) 1 4 5
Rcd1 PF04078 Cell differentiation family, Rcd1-like 1 1 1
RCR PF12273 Chitin synthesis regulation, resistance to Congo red 0 0 0
RcsC PF09456 RcsC Alpha-Beta-Loop (ABL) 1 0 2
RCSD PF05177 RCSD region 0 0 0
RD3 PF14473 RD3 protein 0 0 0
RDD PF06271 RDD family 0 0 0
RdgC PF04381 Putative exonuclease, RdgC 1 2 2
RDM PF11002 RFPL defining motif (RDM) 2 1 1
RdRP PF05183 RNA dependent RNA polymerase 1 1 2
RdRP_1 PF00680 RNA dependent RNA polymerase 1 44 103
RdRP_2 PF00978 RNA dependent RNA polymerase 0 0 0
RdRP_3 PF00998 Viral RNA dependent RNA polymerase 1 124 144
RdRP_4 PF02123 Viral RNA-directed RNA-polymerase 2 2 11
RdRP_5 PF07925 Reovirus RNA-dependent RNA polymerase lambda 3 0 7 7
RDV-p3 PF09231 Rice dwarf virus p3 3 0 1
Rdx PF10262 Rdx family 1 1 8
RebB PF11747 Killing trait 0 0 0
REC114-like PF15165 Meiotic recombination protein REC114-like 0 0 0
RecA PF00154 recA bacterial DNA recombination protein 1 16 60
Receptor_2B4 PF11465 Natural killer cell receptor 2B4 2 0 3
Receptor_IA-2 PF11548 Protein-tyrosine phosphatase receptor IA-2 1 1 7
Recep_L_domain PF01030 Receptor L domain 7 12 36
Recombinase PF07508 Recombinase 0 1 1
RecO_C PF02565 Recombination protein O C terminal 2 1 5
RecO_N PF11967 Recombination protein O N terminal 1 3 5
RecO_N_2 PF13114 RecO N terminal 0 0 0
RecQ5 PF06959 RecQ helicase protein-like 5 (RecQ5) 0 0 0
RecR PF02132 RecR protein 2 2 6
RecT PF03837 RecT family 0 0 0
RecU PF03838 Recombination protein U 1 2 4
RecX PF02631 RecX family 1 0 4
Red1 PF07964 Rec10 / Red1 0 0 0
Redoxin PF08534 Redoxin 4 18 65
Reductase_C PF14759 Reductase C-terminal 4 5 16
RED_C PF07807 RED-like protein C-terminal region 0 0 0
RED_N PF07808 RED-like protein N-terminal region 0 0 0
Reeler PF02014 Reeler domain 1 1 3
REF PF05755 Rubber elongation factor protein (REF) 0 0 0
REGB_T4 PF10715 Endoribonuclease RegB T4-bacteriophage encoded 0 0 1
Regulator_TrmB PF11495 Archaeal transcriptional regulator TrmB 0 5 4
Reg_prop PF07494 Two component regulator propeller 2 9 5
REJ PF02010 REJ domain 0 0 2
Relaxase PF03432 Relaxase/Mobilisation nuclease domain 0 0 0
RelA_SpoT PF04607 Region found in RelA / SpoT proteins 2 2 3
RelB PF04221 RelB antitoxin 2 1 3
RelB_N PF12910 Antitoxin of toxin-antitoxin stability system N-terminal 2 1 1
RELT PF12606 Tumour necrosis factor receptor superfamily member 19 0 0 0
Remorin_C PF03763 Remorin, C-terminal region 0 0 0
Remorin_N PF03766 Remorin, N-terminal region 0 0 0
Renin_r PF07850 Renin receptor-like protein 2 1 2
Reoviridae_Vp9 PF08978 Reoviridae VP9 1 0 1
Reovirus_cap PF00979 Reovirus outer capsid protein, Sigma 3 2 1 3
Reovirus_L2 PF06016 Reovirus core-spike protein lambda-2 (L2) 2 0 4
Reovirus_M2 PF05993 Reovirus major virion structural protein Mu-1/Mu-1C (M2) 4 4 4
Reovirus_Mu2 PF07781 Reovirus minor core protein Mu-2 0 0 0
Reo_P9 PF06043 Reovirus P9-like family 1 0 1
Reo_sigma1 PF01664 Reovirus viral attachment protein sigma 1 2 4 9
Reo_sigmaC PF04582 Reovirus sigma C capsid protein 1 5 5
Rep-A_N PF04057 Replication factor-A protein 1, N-terminal domain 0 2 5
RepA1_leader PF08048 Tap RepA1 leader peptide 0 0 0
RepA_C PF04796 Plasmid encoded RepA protein 0 0 0
RepA_N PF06970 Replication initiator protein A (RepA) N-terminus 0 0 0
RepB PF07506 RepB plasmid partitioning protein 0 0 0
RepB-RCR_reg PF10723 Replication regulatory protein RepB 1 0 1
RepC PF06504 Replication protein C (RepC) 0 0 0
RepL PF05732 Firmicute plasmid replication protein (RepL) 0 0 0
Replicase PF03090 Replicase family 0 0 0
Replic_Relax PF13814 Replication-relaxation 0 0 0
Repressor_Mnt PF11423 Regulatory protein Mnt 2 0 2
Reprolysin PF01421 Reprolysin (M12B) family zinc metalloprotease 3 31 50
Reprolysin_2 PF13574 Metallo-peptidase family M12B Reprolysin-like 2 3 13
Reprolysin_3 PF13582 Metallo-peptidase family M12B Reprolysin-like 0 3 1
Reprolysin_4 PF13583 Metallo-peptidase family M12B Reprolysin-like 0 0 0
Reprolysin_5 PF13688 Metallo-peptidase family M12 2 26 22
Rep_1 PF01446 Replication protein 0 0 0
Rep_2 PF01719 Plasmid replication protein 1 3 2
Rep_3 PF01051 Initiator Replication protein 1 4 4
Rep_4 PF05797 Yeast trans-acting factor (REP1/REP2) 0 0 0
Rep_fac-A_3 PF08661 Replication factor A protein 3 4 3 8
Rep_fac-A_C PF08646 Replication factor-A C terminal domain 3 1 4
Rep_fac_C PF08542 Replication factor C C-terminal domain 4 0 5
Rep_N PF08724 Rep protein catalytic domain like 1 3 3
Rep_Org_C PF06926 Putative replisome organiser protein C-terminus 0 0 0
Rep_trans PF02486 Replication initiation factor 0 0 0
Requiem_N PF14051 N-terminal domain of DPF2/REQ. 0 0 0
Rer1 PF03248 Rer1 family 0 0 0
RES PF08808 RES domain 0 0 0
ResB PF05140 ResB-like family 0 0 0
ResIII PF04851 Type III restriction enzyme, res subunit 7 12 18
Resistin PF06954 Resistin 1 6 3
Resolvase PF00239 Resolvase, N terminal domain 2 5 19
RESP18 PF14948 RESP18 domain 0 0 0
Response_reg PF00072 Response regulator receiver domain 23 43 269
RestrictionMunI PF11407 Type II restriction enzyme MunI 1 0 1
RestrictionSfiI PF11487 Type II restriction enzyme SfiI 1 1 2
Reticulon PF02453 Reticulon 0 0 3
Retinal PF15449 Retinal protein 0 0 0
Retinin_C PF04527 Drosophila Retinin like protein 0 0 0
Retrotrans_gag PF03732 Retrotransposon gag protein 0 0 0
Retro_M PF02813 Retroviral M domain 0 0 1
Ret_tiss PF10044 Retinal tissue protein 0 0 0
REV PF00424 REV protein (anti-repression trans-activator protein) 1 3 5
RE_AccI PF09545 AccI restriction endonuclease 0 0 0
RE_Alw26IDE PF09665 Type II restriction endonuclease (RE_Alw26IDE) 0 0 0
RE_AlwI PF09491 AlwI restriction endonuclease 0 3 2
RE_ApaLI PF09499 ApaLI-like restriction endonuclease 0 0 0
RE_Bpu10I PF09549 Bpu10I restriction endonuclease 0 0 0
RE_Bsp6I PF09504 Bsp6I restriction endonuclease 0 0 0
RE_BstXI PF09552 BstXI restriction endonuclease 0 0 0
RE_CfrBI PF09516 CfrBI restriction endonuclease 0 0 0
RE_Eco29kI PF09517 Eco29kI restriction endonuclease 1 1 3
RE_Eco47II PF09553 Eco47II restriction endonuclease 0 0 0
RE_EcoO109I PF14511 Type II restriction endonuclease EcoO109I 1 2 2
RE_HaeII PF09554 HaeII restriction endonuclease 0 0 0
RE_HaeIII PF09556 HaeIII restriction endonuclease 0 0 0
RE_HindIII PF09518 HindIII restriction endonuclease 1 4 2
RE_HindVP PF09519 HindVP restriction endonuclease 0 0 0
RE_HpaII PF09561 HpaII restriction endonuclease 0 0 0
RE_LlaJI PF09563 LlaJI restriction endonuclease 0 0 0
RE_LlaMI PF09562 LlaMI restriction endonuclease 0 0 0
RE_MamI PF09567 MamI restriction endonuclease 0 0 0
RE_MjaI PF09568 MjaI restriction endonuclease 0 0 0
RE_NgoBV PF09564 NgoBV restriction endonuclease 0 0 0
RE_NgoFVII PF09565 NgoFVII restriction endonuclease 0 0 0
RE_NgoPII PF09521 NgoPII restriction endonuclease 0 0 0
RE_R_Pab1 PF09522 R.Pab1 restriction endonuclease 1 0 1
RE_SacI PF09566 SacI restriction endonuclease 0 0 0
RE_ScaI PF09569 ScaI restriction endonuclease 0 0 0
RE_SinI PF09570 SinI restriction endonuclease 0 0 0
RE_TaqI PF09573 TaqI restriction endonuclease 0 0 0
RE_TdeIII PF09520 Type II restriction endonuclease, TdeIII 0 0 0
RE_XamI PF09572 XamI restriction endonuclease 0 0 0
RE_XcyI PF09571 XcyI restriction endonuclease 0 0 0
RF-1 PF00472 RF-1 domain 5 4 25
RFamide_26RFa PF11109 Orexigenic neuropeptide Qrfp/P518 0 0 0
RFC1 PF08519 Replication factor RFC1 C terminal domain 3 0 1
RFPL3_antisense PF10489 Ret finger protein-like 3 antisense 0 0 0
Rft-1 PF04506 Rft protein 0 0 0
RFX1_trans_act PF04589 RFX1 transcription activation region 0 0 0
RFX5_DNA_bdg PF14621 RFX5 DNA-binding domain 0 0 0
RFXA_RFXANK_bdg PF15289 Regulatory factor X-associated C-terminal binding domain 1 0 1
RFX_DNA_binding PF02257 RFX DNA-binding domain 1 3 2
RGCC PF15151 Response gene to complement 32 protein family 0 0 0
RGM_C PF06534 Repulsive guidance molecule (RGM) C-terminus 2 0 3
RGM_N PF06535 Repulsive guidance molecule (RGM) N-terminus 3 0 3
RGP PF03214 Reversibly glycosylated polypeptide 0 0 0
Rgp1 PF08737 Rgp1 0 0 0
RgpF PF05045 Rhamnan synthesis protein F 0 0 0
RGS PF00615 Regulator of G protein signaling domain 8 8 60
RGS-like PF09128 Regulator of G protein signalling-like domain 1 1 7
RhaA PF06134 L-rhamnose isomerase (RhaA) 1 5 7
Rhabdo_glycop PF00974 Rhabdovirus spike glycoprotein 3 4 3
Rhabdo_M1 PF03342 Rhabdovirus M1 matrix protein (M1 polymerase-associated protein) 0 0 0
Rhabdo_M2 PF04785 Rhabdovirus matrix protein M2 0 0 1
Rhabdo_matrix PF03397 Rhabdovirus matrix protein 0 0 0
Rhabdo_ncap PF00945 Rhabdovirus nucleocapsid protein 2 2 12
Rhabdo_ncap_2 PF03216 Rhabdovirus nucleoprotein 0 0 0
Rhabdo_NV PF02484 Rhabdovirus Non-virion protein 0 0 0
Rhamnogal_lyase PF06045 Rhamnogalacturonate lyase family 0 0 0
Rhamno_transf PF11316 Putative rhamnosyl transferase 0 0 0
RhaT PF06379 L-rhamnose-proton symport protein (RhaT) 0 0 0
RHD PF00554 Rel homology domain (RHD) 6 3 33
RHD3 PF05879 Root hair defective 3 GTP-binding protein (RHD3) 0 0 0
RhgB_N PF09284 Rhamnogalacturonase B, N-terminal 3 3 4
RHH_1 PF01402 Ribbon-helix-helix protein, copG family 3 11 28
RHH_2 PF03693 Uncharacterised protein family (UPF0156) 2 1 1
RHH_3 PF12651 Ribbon-helix-helix domain 0 0 0
RHH_4 PF13467 Ribbon-helix-helix domain 1 3 1
RHIM PF12721 RIP homotypic interaction motif 0 0 0
RHINO PF15319 RAD9, RAD1, HUS1-interacting nuclear orphan protein 0 0 0
Rhodanese PF00581 Rhodanese-like domain 8 34 89
RhodobacterPufX PF11511 Intrinsic membrane protein PufX 0 0 3
Rhodopsin_N PF10413 Amino terminal of the G-protein receptor rhodopsin 2 5 24
RhoGAP PF00620 RhoGAP domain 3 7 23
RhoGEF PF00621 RhoGEF domain 11 3 42
Rhomboid PF01694 Rhomboid family 2 18 20
Rhomboid_SP PF12595 Rhomboid serine protease 0 0 0
Rho_Binding PF08912 Rho Binding 2 1 2
Rho_GDI PF02115 RHO protein GDP dissociation inhibitor 2 8 24
Rho_N PF07498 Rho termination factor, N-terminal domain 3 2 12
Rho_RNA_bind PF07497 Rho termination factor, RNA-binding domain 2 2 12
RHS PF03527 RHS protein 0 0 0
RHSP PF07999 Retrotransposon hot spot protein 0 0 0
RHS_repeat PF05593 RHS Repeat 0 0 0
Rhv PF00073 picornavirus capsid protein 8 45 136
Rib PF08428 Rib/alpha-like repeat 0 0 0
RIB43A PF05914 RIB43A 0 0 0
RibD_C PF01872 RibD C-terminal domain 2 20 17
Ribonuclease PF00545 ribonuclease 4 33 178
Ribonuclease_3 PF00636 Ribonuclease III domain 2 8 22
Ribonuclease_P PF00825 Ribonuclease P 1 5 6
Ribonuclease_T2 PF00445 Ribonuclease T2 family 1 16 25
Ribonucleas_3_2 PF11469 Ribonuclease III 1 0 1
Ribonucleas_3_3 PF14622 Ribonuclease-III-like 2 1 3
Ribonuc_2-5A PF06479 Ribonuclease 2-5A 2 1 8
Ribonuc_L-PSP PF01042 Endoribonuclease L-PSP 1 24 39
Ribonuc_P_40 PF08584 Ribonuclease P 40kDa (Rpp40) subunit 0 0 0
Ribonuc_red_2_N PF08471 Class II vitamin B12-dependent ribonucleotide reductase 0 0 0
Ribonuc_red_lgC PF02867 Ribonucleotide reductase, barrel domain 6 23 64
Ribonuc_red_lgN PF00317 Ribonucleotide reductase, all-alpha domain 4 8 62
Ribonuc_red_sm PF00268 Ribonucleotide reductase, small chain 5 33 70
Ribophorin_I PF04597 Ribophorin I 0 0 0
Ribophorin_II PF05817 Oligosaccharyltransferase subunit Ribophorin II 0 0 0
Ribosomal_60s PF00428 60s Acidic ribosomal protein 14 0 12
Ribosomal_L1 PF00687 Ribosomal protein L1p/L10e family 11 18 132
Ribosomal_L10 PF00466 Ribosomal protein L10 18 3 108
Ribosomal_L11 PF00298 Ribosomal protein L11, RNA binding domain 14 3 224
Ribosomal_L11_N PF03946 Ribosomal protein L11, N-terminal domain 20 10 166
Ribosomal_L12 PF00542 Ribosomal protein L7/L12 C-terminal domain 4 2 21
Ribosomal_L13 PF00572 Ribosomal protein L13 14 5 300
Ribosomal_L13e PF01294 Ribosomal protein L13e 10 0 10
Ribosomal_L14 PF00238 Ribosomal protein L14p/L23e 14 3 304
Ribosomal_L14e PF01929 Ribosomal protein L14 18 1 18
Ribosomal_L15e PF00827 Ribosomal L15 12 5 84
Ribosomal_L16 PF00252 Ribosomal protein L16p/L10e 20 6 302
Ribosomal_L17 PF01196 Ribosomal protein L17 3 1 215
Ribosomal_L18ae PF01775 Ribosomal L18ae/LX protein domain 21 0 16
Ribosomal_L18e PF00828 Ribosomal protein L18e/L15 24 6 297
Ribosomal_L18p PF00861 Ribosomal L18p/L5e family 19 2 297
Ribosomal_L18_c PF14204 Ribosomal L18 C-terminal region 4 0 18
Ribosomal_L19 PF01245 Ribosomal protein L19 3 2 209
Ribosomal_L19e PF01280 Ribosomal protein L19e 9 1 88
Ribosomal_L2 PF00181 Ribosomal Proteins L2, RNA binding domain 22 3 311
Ribosomal_L20 PF00453 Ribosomal protein L20 6 3 213
Ribosomal_L21e PF01157 Ribosomal protein L21e 11 2 86
Ribosomal_L21p PF00829 Ribosomal prokaryotic L21 protein 2 2 211
Ribosomal_L22 PF00237 Ribosomal protein L22p/L17e 15 14 312
Ribosomal_L22e PF01776 Ribosomal L22e protein family 6 0 12
Ribosomal_L23 PF00276 Ribosomal protein L23 11 3 305
Ribosomal_L23eN PF03939 Ribosomal protein L23, N-terminal domain 9 0 14
Ribosomal_L24e PF01246 Ribosomal protein L24e 14 2 90
Ribosomal_L25p PF01386 Ribosomal L25p family 3 3 215
Ribosomal_L27 PF01016 Ribosomal L27 protein 6 3 219
Ribosomal_L27e PF01777 Ribosomal L27e protein family 6 0 12
Ribosomal_L28 PF00830 Ribosomal L28 family 2 1 189
Ribosomal_L28e PF01778 Ribosomal L28e protein family 14 0 8
Ribosomal_L29 PF00831 Ribosomal L29 protein 18 1 313
Ribosomal_L29e PF01779 Ribosomal L29e protein family 7 0 12
Ribosomal_L2_C PF03947 Ribosomal Proteins L2, C-terminal domain 11 5 310
Ribosomal_L3 PF00297 Ribosomal protein L3 21 7 309
Ribosomal_L30 PF00327 Ribosomal protein L30p/L7e 16 4 307
Ribosomal_L30_N PF08079 Ribosomal L30 N-terminal domain 26 0 14
Ribosomal_L31 PF01197 Ribosomal protein L31 3 2 143
Ribosomal_L31e PF01198 Ribosomal protein L31e 16 0 89
Ribosomal_L32e PF01655 Ribosomal protein L32 24 4 86
Ribosomal_L32p PF01783 Ribosomal L32p protein family 4 2 223
Ribosomal_L33 PF00471 Ribosomal protein L33 4 2 210
Ribosomal_L34 PF00468 Ribosomal protein L34 6 1 208
Ribosomal_L34e PF01199 Ribosomal protein L34e 21 1 14
Ribosomal_L35Ae PF01247 Ribosomal protein L35Ae 17 0 15
Ribosomal_L35p PF01632 Ribosomal protein L35 6 2 206
Ribosomal_L36 PF00444 Ribosomal protein L36 4 2 167
Ribosomal_L36e PF01158 Ribosomal protein L36e 16 0 12
Ribosomal_L37 PF08561 Mitochondrial ribosomal protein L37 0 0 0
Ribosomal_L37ae PF01780 Ribosomal L37ae protein family 18 3 85
Ribosomal_L37e PF01907 Ribosomal protein L37e 14 4 86
Ribosomal_L38e PF01781 Ribosomal L38e protein family 10 0 12
Ribosomal_L39 PF00832 Ribosomal L39 protein 18 3 87
Ribosomal_L4 PF00573 Ribosomal protein L4/L1 family 18 6 307
Ribosomal_L40e PF01020 Ribosomal L40e family 16 1 14
Ribosomal_L41 PF05162 Ribosomal protein L41 8 0 7
Ribosomal_L44 PF00935 Ribosomal protein L44 20 6 88
Ribosomal_L5 PF00281 Ribosomal protein L5 20 5 302
Ribosomal_L50 PF10501 Ribosomal subunit 39S 0 0 0
Ribosomal_L5_C PF00673 ribosomal L5P family C-terminus 20 3 302
Ribosomal_L6 PF00347 Ribosomal protein L6 23 2 302
Ribosomal_L6e PF01159 Ribosomal protein L6e 15 0 14
Ribosomal_L6e_N PF03868 Ribosomal protein L6, N-terminal domain 7 0 3
Ribosomal_L7Ae PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 35 15 166
Ribosomal_L9_C PF03948 Ribosomal protein L9, C-terminal domain 4 1 153
Ribosomal_L9_N PF01281 Ribosomal protein L9, N-terminal domain 4 6 173
Ribosomal_S10 PF00338 Ribosomal protein S10p/S20e 8 7 300
Ribosomal_S11 PF00411 Ribosomal protein S11 10 5 298
Ribosomal_S13 PF00416 Ribosomal protein S13/S18 6 4 299
Ribosomal_S13_N PF08069 Ribosomal S13/S15 N-terminal domain 9 0 19
Ribosomal_S14 PF00253 Ribosomal protein S14p/S29e 9 5 295
Ribosomal_S15 PF00312 Ribosomal protein S15 8 6 311
Ribosomal_S16 PF00886 Ribosomal protein S16 1 4 276
Ribosomal_S17 PF00366 Ribosomal protein S17 6 3 299
Ribosomal_S17e PF00833 Ribosomal S17 8 0 20
Ribosomal_S18 PF01084 Ribosomal protein S18 5 3 277
Ribosomal_S19 PF00203 Ribosomal protein S19 7 4 308
Ribosomal_S19e PF01090 Ribosomal protein S19e 3 2 21
Ribosomal_S2 PF00318 Ribosomal protein S2 12 6 299
Ribosomal_S20p PF01649 Ribosomal protein S20 1 6 274
Ribosomal_S21 PF01165 Ribosomal protein S21 4 1 74
Ribosomal_S21e PF01249 Ribosomal protein S21e 6 0 16
Ribosomal_S22 PF08136 30S ribosomal protein subunit S22 family 0 0 0
Ribosomal_S24e PF01282 Ribosomal protein S24e 7 2 23
Ribosomal_S25 PF03297 S25 ribosomal protein 7 0 18
Ribosomal_S26e PF01283 Ribosomal protein S26e 9 2 14
Ribosomal_S27 PF01599 Ribosomal protein S27a 9 1 16
Ribosomal_S27e PF01667 Ribosomal protein S27 6 1 18
Ribosomal_S28e PF01200 Ribosomal protein S28e 8 0 21
Ribosomal_S30 PF04758 Ribosomal protein S30 16 0 21
Ribosomal_S30AE PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 2 4 16
Ribosomal_S3Ae PF01015 Ribosomal S3Ae family 5 2 15
Ribosomal_S3_C PF00189 Ribosomal protein S3, C-terminal domain 9 4 294
Ribosomal_S4 PF00163 Ribosomal protein S4/S9 N-terminal domain 9 6 299
Ribosomal_S4e PF00900 Ribosomal family S4e 6 1 18
Ribosomal_S4Pg PF11993 Ribosomal S4P (gammaproteobacterial) 0 0 0
Ribosomal_S5 PF00333 Ribosomal protein S5, N-terminal domain 12 4 301
Ribosomal_S5_C PF03719 Ribosomal protein S5, C-terminal domain 6 5 301
Ribosomal_S6 PF01250 Ribosomal protein S6 3 6 291
Ribosomal_S6e PF01092 Ribosomal protein S6e 3 0 16
Ribosomal_S7 PF00177 Ribosomal protein S7p/S5e 15 11 307
Ribosomal_S7e PF01251 Ribosomal protein S7e 17 0 14
Ribosomal_S8 PF00410 Ribosomal protein S8 12 7 306
Ribosomal_S8e PF01201 Ribosomal protein S8e 3 1 18
Ribosomal_S9 PF00380 Ribosomal protein S9/S16 14 12 296
Ribosomal_TL5_C PF14693 Ribosomal protein TL5, C-terminal domain 3 2 106
Ribosom_S12_S23 PF00164 Ribosomal protein S12/S23 17 14 316
Ribos_L4_asso_C PF14374 60S ribosomal protein L4 C-terminal domain 12 0 14
Ribul_P_3_epim PF00834 Ribulose-phosphate 3 epimerase family 1 14 14
Rib_5-P_isom_A PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 1 19 22
Rib_hydrolayse PF02267 ADP-ribosyl cyclase 1 39 62
Rib_recp_KP_reg PF05104 Ribosome receptor lysine/proline rich region 0 0 0
RIC1 PF07064 RIC1 0 0 0
RIC3 PF15361 Resistance to inhibitors of cholinesterase homologue 3 0 0 0
Ric8 PF10165 Guanine nucleotide exchange factor synembryn 0 0 0
RICH PF05062 RICH domain 0 0 0
RicinB_lectin_2 PF14200 Ricin-type beta-trefoil lectin domain-like 2 16 27
Ricin_B_lectin PF00652 Ricin-type beta-trefoil lectin domain 6 44 84
Rick_17kDa_Anti PF05433 Glycine zipper 2TM domain 0 0 0
RICTOR_M PF14666 Rapamycin-insensitive companion of mTOR, middle domain 0 0 0
RICTOR_N PF14664 Rapamycin-insensitive companion of mTOR, N-term 0 0 0
RICTOR_phospho PF14665 Rapamycin-insensitive companion of mTOR, phosphorylation-site 0 0 0
RICTOR_V PF14668 Rapamycin-insensitive companion of mTOR, domain 5 0 0 0
Rieske PF00355 Rieske [2Fe-2S] domain 14 24 146
Rieske_2 PF13806 Rieske-like [2Fe-2S] domain 1 4 5
Rif1_N PF12231 Rap1-interacting factor 1 N terminal 0 0 0
Rifin_STEVOR PF02009 Rifin/stevor family 0 0 0
RIG-I_C-RD PF11648 C-terminal domain of RIG-I 3 4 21
RIH_assoc PF08454 RyR and IP3R Homology associated 0 0 0
RIIa PF02197 Regulatory subunit of type II PKA R-subunit 2 4 14
RII_binding_1 PF10522 RII binding domain 0 0 0
RILP PF11461 Rab interacting lysosomal protein 1 0 1
RimK PF08443 RimK-like ATP-grasp domain 1 15 17
RimM PF01782 RimM N-terminal domain 3 4 6
RinB PF06116 Transcriptional activator RinB 0 0 0
RINGv PF12906 RING-variant domain 0 1 2
Ring_hydroxyl_A PF00848 Ring hydroxylating alpha subunit (catalytic domain) 3 22 41
Ring_hydroxyl_B PF00866 Ring hydroxylating beta subunit 3 10 40
RINT1_TIP1 PF04437 RINT-1 / TIP-1 family 1 1 1
RIO1 PF01163 RIO1 family 2 11 12
Rio2_N PF09202 Rio2, N-terminal 1 1 7
RIP PF00161 Ribosome inactivating protein 4 82 185
Ripply PF14998 Transcription Regulator 0 0 0
RIX1 PF08167 rRNA processing/ribosome biogenesis 0 0 0
RL11D PF11088 Glycoprotein encoding membrane proteins RL5A and RL6 0 0 0
RLAN PF14401 RimK-like ATPgrasp N-terminal domain 0 0 0
RLI PF04068 Possible Fer4-like domain in RNase L inhibitor, RLI 3 1 3
RLL PF10036 Putative carnitine deficiency-associated protein 0 0 0
RloB PF13707 RloB-like protein 0 0 0
RMF PF04957 Ribosome modulation factor 1 0 3
RmlD_sub_bind PF04321 RmlD substrate binding domain 1 14 9
RMMBL PF07521 RNA-metabolising metallo-beta-lactamase 3 8 20
RMP PF14996 Retinal Maintenance 0 0 0
RmuC PF02646 RmuC family 0 0 0
RNA12 PF10443 RNA12 protein 0 0 0
RnaseA PF00074 Pancreatic ribonuclease 5 102 349
RNaseH_C PF09293 T4 RNase H, C terminal 1 2 6
RNase_E_G PF10150 Ribonuclease E/G family 2 2 8
RNase_H PF00075 RNase H 5 38 289
RNase_H2-Ydr279 PF09468 Ydr279p protein family (RNase H2 complex component) 5 1 5
RNase_H2_suC PF08615 Ribonuclease H2 non-catalytic subunit (Ylr154p-like) 3 1 4
RNase_HII PF01351 Ribonuclease HII 5 4 24
RNase_H_2 PF13482 RNase_H superfamily 1 5 17
RNase_PH PF01138 3' exoribonuclease family, domain 1 9 22 47
RNase_PH_C PF03725 3' exoribonuclease family, domain 2 7 13 45
RNase_P_p30 PF01876 RNase P subunit p30 1 2 2
RNase_P_pop3 PF08228 RNase P subunit Pop3 0 0 0
RNase_P_Rpp14 PF01900 Rpp14/Pop5 family 2 2 2
RNase_T PF00929 Exonuclease 5 20 48
RNase_Zc3h12a PF11977 Zc3h12a-like Ribonuclease NYN domain 1 1 3
RNase_Zc3h12a_2 PF14626 Zc3h12a-like Ribonuclease NYN domain 0 0 0
RNA_bind PF08675 RNA binding domain 1 3 4
RNA_binding PF01877 RNA binding 1 3 7
RNA_bind_2 PF10133 Predicted RNA-binding protein 0 0 0
RNA_capsid PF03035 Calicivirus putative RNA polymerase/capsid protein 0 0 0
RNA_GG_bind PF10258 PHAX RNA-binding domain 1 0 2
RNA_helicase PF00910 RNA helicase 0 0 0
RNA_ligase PF09414 RNA ligase 1 8 5
RNA_lig_T4_1 PF09511 RNA ligase 1 4 1
RNA_Me_trans PF04252 Predicted SAM-dependent RNA methyltransferase 0 0 0
RNA_pol PF00940 DNA-dependent RNA polymerase 3 8 14
RNA_polI_A14 PF08203 Yeast RNA polymerase I subunit RPA14 2 1 1
RNA_polI_A34 PF08208 DNA-directed RNA polymerase I subunit RPA34.5 2 1 2
RNA_pol_3_Rpc31 PF11705 DNA-directed RNA polymerase III subunit Rpc31 0 0 0
RNA_pol_A_bac PF01000 RNA polymerase Rpb3/RpoA insert domain 8 3 138
RNA_pol_A_CTD PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 9 2 17
RNA_pol_I_A49 PF06870 A49-like RNA polymerase I associated factor 2 1 4
RNA_pol_I_TF PF04090 RNA polymerase I specific initiation factor 0 0 0
RNA_pol_L PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 13 5 118
RNA_pol_L_2 PF13656 RNA polymerase Rpb3/Rpb11 dimerisation domain 6 2 101
RNA_POL_M_15KD PF02150 RNA polymerases M/15 Kd subunit 4 1 95
RNA_pol_N PF01194 RNA polymerases N / 8 kDa subunit 4 1 104
RNA_pol_Rbc25 PF08292 RNA polymerase III subunit Rpc25 2 0 2
RNA_pol_Rpa2_4 PF06883 RNA polymerase I, Rpa2 specific domain 0 0 0
RNA_pol_Rpb1_1 PF04997 RNA polymerase Rpb1, domain 1 23 10 141
RNA_pol_Rpb1_2 PF00623 RNA polymerase Rpb1, domain 2 16 16 139
RNA_pol_Rpb1_3 PF04983 RNA polymerase Rpb1, domain 3 15 5 139
RNA_pol_Rpb1_4 PF05000 RNA polymerase Rpb1, domain 4 18 7 139
RNA_pol_Rpb1_5 PF04998 RNA polymerase Rpb1, domain 5 25 15 142
RNA_pol_Rpb1_6 PF04992 RNA polymerase Rpb1, domain 6 6 1 87
RNA_pol_Rpb1_7 PF04990 RNA polymerase Rpb1, domain 7 6 0 87
RNA_pol_Rpb1_R PF05001 RNA polymerase Rpb1 C-terminal repeat 6 3 6
RNA_pol_Rpb2_1 PF04563 RNA polymerase beta subunit 20 5 140
RNA_pol_Rpb2_2 PF04561 RNA polymerase Rpb2, domain 2 13 1 114
RNA_pol_Rpb2_3 PF04565 RNA polymerase Rpb2, domain 3 10 13 137
RNA_pol_Rpb2_4 PF04566 RNA polymerase Rpb2, domain 4 7 1 103
RNA_pol_Rpb2_45 PF10385 RNA polymerase beta subunit external 1 domain 6 1 36
RNA_pol_Rpb2_5 PF04567 RNA polymerase Rpb2, domain 5 9 1 103
RNA_pol_Rpb2_6 PF00562 RNA polymerase Rpb2, domain 6 23 18 140
RNA_pol_Rpb2_7 PF04560 RNA polymerase Rpb2, domain 7 11 10 140
RNA_pol_Rpb4 PF03874 RNA polymerase Rpb4 4 1 61
RNA_pol_Rpb5_C PF01191 RNA polymerase Rpb5, C-terminal domain 6 1 106
RNA_pol_Rpb5_N PF03871 RNA polymerase Rpb5, N-terminal domain 5 0 96
RNA_pol_Rpb6 PF01192 RNA polymerase Rpb6 8 2 137
RNA_pol_Rpb8 PF03870 RNA polymerase Rpb8 8 0 97
RNA_pol_Rpc34 PF05158 RNA polymerase Rpc34 subunit 0 0 3
RNA_pol_Rpc4 PF05132 RNA polymerase III RPC4 0 0 0
RNA_pol_Rpc82 PF05645 RNA polymerase III subunit RPC82 1 0 2
RNA_pol_Rpo13 PF12136 RNA polymerase Rpo13 subunit HTH domain 3 0 7
RNA_replicase_B PF03431 RNA replicase, beta-chain 5 7 12
RNB PF00773 RNB domain 4 6 8
Rnf-Nqr PF02508 Rnf-Nqr subunit, membrane protein 0 0 0
RNF111_N PF15303 E3 ubiquitin-protein ligase Arkadia N-terminus 0 0 0
RnfC_N PF13375 RnfC Barrel sandwich hybrid domain 0 0 0
RNHCP PF12647 RNHCP domain 0 0 0
Rnk_N PF14760 Rnk N-terminus 2 3 2
RNR_inhib PF08591 Ribonucleotide reductase inhibitor 0 0 0
RNR_N PF08343 Ribonucleotide reductase N-terminal 3 0 5
Robl_LC7 PF03259 Roadblock/LC7 domain 3 4 21
Rod-binding PF10135 Rod binding protein 0 0 0
Rod_C PF10493 Rough deal protein C-terminal region 0 0 0
Rod_cone_degen PF15201 Progressive rod-cone degeneration 0 0 0
ROF PF07073 Modulator of Rho-dependent transcription termination (ROF) 0 0 1
Rogdi_lz PF10259 Rogdi leucine zipper containing protein 0 0 0
ROK PF00480 ROK family 3 26 27
ROKNT PF08067 ROKNT (NUC014) domain 0 0 0
RolB_RolC PF02027 RolB/RolC glucosidase family 1 1 2
Romo1 PF10247 Reactive mitochondrial oxygen species modulator 1 0 0 0
rOmpB PF12334 Rickettsia outer membrane protein B 0 0 0
Rootletin PF15035 Ciliary rootlet component, centrosome cohesion 0 0 0
Root_cap PF06830 Root cap 0 0 0
Rop PF01815 Rop protein 1 3 18
Rop-like PF05082 Rop-like 1 1 2
Rossmann-like PF10727 Rossmann-like domain 1 3 2
ROS_MUCR PF05443 ROS/MUCR transcriptional regulator protein 0 0 1
Rot1 PF10681 Chaperone for protein-folding within the ER, fungal 0 0 0
Rotamase PF00639 PPIC-type PPIASE domain 3 44 56
Rotamase_2 PF13145 PPIC-type PPIASE domain 0 0 2
Rotamase_3 PF13616 PPIC-type PPIASE domain 0 4 7
Rotavirus_VP1 PF12289 Rotavirus VP1 structural protein 1 0 11
Rotavirus_VP3 PF06929 Rotavirus VP3 protein 0 0 0
Rotavirus_VP7 PF05868 Rotavirus major outer capsid protein VP7 0 0 0
Rota_Capsid_VP6 PF00980 Rotavirus major capsid protein VP6 2 1 5
Rota_NS26 PF01525 Rotavirus NS26 0 0 0
Rota_NS35 PF02509 Rotavirus non-structural protein 35 1 5 8
Rota_NS53 PF00981 Rotavirus RNA-binding Protein 53 (NS53) 0 0 0
Rota_NS6 PF04866 Rotavirus non-structural protein 6 0 0 0
Rota_NSP3 PF01665 Rotavirus non-structural protein NSP3 1 1 2
Rota_NSP4 PF01452 Rotavirus non structural protein 1 4 5
Rota_VP2 PF05087 Rotavirus VP2 protein 3 0 4
Roughex PF06020 Drosophila roughex protein 0 0 0
Rox3 PF08633 Rox3 mediator complex subunit 0 0 0
RP-C PF03428 Replication protein C N-terminal domain 0 0 0
RP-C_C PF11800 Replication protein C C-terminal region 0 0 0
RP1-2 PF12042 Tubuliform egg casing silk strands structural domain 0 0 4
RPA PF10134 Replication initiator protein A 0 0 0
RPAP1_C PF08620 RPAP1-like, C-terminal 0 0 0
RPAP1_N PF08621 RPAP1-like, N-terminal 0 0 0
RPAP2_Rtr1 PF04181 Rtr1/RPAP2 family 0 1 1
RPAP3_C PF13877 Potential Monad-binding region of RPAP3 0 0 0
RPA_C PF08784 Replication protein A C terminal 4 1 8
RPA_interact_C PF14768 Replication protein A interacting C-terminal 0 0 0
RPA_interact_M PF14767 Replication protein A interacting middle 0 0 0
RPA_interact_N PF14766 Replication protein A interacting N-terminal 0 0 0
RPE65 PF03055 Retinal pigment epithelial membrane protein 1 11 9
RPEL PF02755 RPEL repeat 2 6 10
RPM2 PF08579 Mitochondrial ribonuclease P subunit (RPM2) 0 0 0
Rpn3_C PF08375 Proteasome regulatory subunit C-terminal 1 0 2
RPN7 PF10602 26S proteasome subunit RPN7 1 1 3
rpo132 PF12415 Poxvirus DNA dependent RNA polymerase 0 0 0
rpo30_N PF12410 Poxvirus DNA dependent RNA polymerase 30kDa subunit 0 0 0
RPOL_N PF14700 DNA-directed RNA polymerase N-terminal 3 2 13
Rpp20 PF12328 Rpp20 subunit of nuclear RNase MRP and P 1 2 1
Rpr2 PF04032 RNAse P Rpr2/Rpp21/SNM1 subunit domain 1 3 4
RPT PF13446 A repeated domain in UCH-protein 0 0 0
RPW8 PF05659 Arabidopsis broad-spectrum mildew resistance protein RPW8 0 0 0
RQC PF09382 RQC domain 2 2 6
RraB PF06877 Regulator of ribonuclease activity B 0 0 1
RRF PF01765 Ribosome recycling factor 7 8 30
Rrf2 PF02082 Transcriptional regulator 1 4 10
RRF_GI PF12614 Ribosome recycling factor 0 0 0
RRM PF10378 Putative RRM domain 0 0 0
RRM_1 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 33 321
RRM_2 PF04059 RNA recognition motif 2 0 0 0
RRM_3 PF08777 RNA binding motif 0 2 3
RRM_4 PF10598 RNA recognition motif of the spliceosomal PrP8 2 0 2
RRM_5 PF13893 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 7 27
RRM_6 PF14259 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) 6 7 53
RRM_DME PF15628 RRM in Demeter 0 0 0
RRN3 PF05327 RNA polymerase I specific transcription initiation factor RRN3 1 0 1
Rrn6 PF10214 RNA polymerase I-specific transcription-initiation factor 0 0 0
RRN7 PF11781 RNA polymerase I-specific transcription initiation factor Rrn7 0 0 0
RRN9 PF10680 RNA polymerase I specific transcription initiation factor 0 0 0
RrnaAD PF00398 Ribosomal RNA adenine dimethylase 1 14 33
rRNA_methylase PF06962 Putative rRNA methylase 1 5 3
rRNA_proc-arch PF13234 rRNA-processing arch domain 3 2 4
rRNA_processing PF08524 rRNA processing 0 0 0
RRP14 PF15459 60S ribosome biogenesis protein Rrp14 0 0 0
Rrp15p PF07890 Rrp15p 0 0 0
RRP7 PF12923 Ribosomal RNA-processing protein 7 (RRP7) 0 0 0
RRS1 PF04939 Ribosome biogenesis regulatory protein (RRS1) 0 0 0
RRXRR PF14239 RRXRR protein 0 0 0
RR_TM4-6 PF06459 Ryanodine Receptor TM 4-6 0 0 0
RS4NT PF08071 RS4NT (NUC023) domain 9 1 15
Rsa3 PF14615 Ribosome-assembly protein 3 0 0 0
RsbRD_N PF14361 RsbT co-antagonist protein rsbRD N-terminal domain 0 0 0
Rsbr_N PF08678 Rsbr N terminal 1 2 1
RsbU_N PF08673 Phosphoserine phosphatase RsbU, N-terminal domain 1 2 4
Rsc14 PF08586 RSC complex, Rsc14/Ldb7 subunit 0 0 0
RSD-2 PF07547 RSD-2 N-terminal domain 0 0 0
Rsd_AlgQ PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 0 1
RseA_C PF03873 Anti sigma-E protein RseA, C-terminal domain 2 1 1
RseA_N PF03872 Anti sigma-E protein RseA, N-terminal domain 4 0 2
RseC_MucC PF04246 Positive regulator of sigma(E), RseC/MucC 0 0 0
RSF PF14876 Respiratory growth transcriptional regulator 0 0 0
RsgI_N PF12791 Anti-sigma factor N-terminus 0 0 0
RskA PF10099 Anti-sigma-K factor rskA 0 0 0
Rsm1 PF08600 Rsm1-like 0 0 0
Rsm22 PF09243 Mitochondrial small ribosomal subunit Rsm22 0 0 0
RsmJ PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ 0 7 4
RSN1_TM PF13967 Late exocytosis, associated with Golgi transport 0 0 0
RSS_P20 PF11757 Suppressor of RNA silencing P21-like 0 0 0
RST PF12174 RCD1-SRO-TAF4 (RST) plant domain 0 0 0
RSV_NS2 PF03113 Respiratory synctial virus non-structural protein NS2 0 0 0
RTA1 PF04479 RTA1 like protein 0 0 0
RTBV_P12 PF06361 Rice tungro bacilliform virus P12 protein 0 0 0
RTBV_P46 PF06216 Rice tungro bacilliform virus P46 protein 0 0 0
RTC PF01137 RNA 3'-terminal phosphate cyclase 2 13 8
RTC4 PF14474 RTC4-like domain 0 0 0
RtcB PF01139 tRNA-splicing ligase RtcB 1 9 7
RtcR PF06956 Regulator of RNA terminal phosphate cyclase 0 0 0
RTC_insert PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain 2 8 8
RteC PF09357 RteC protein 0 0 0
Rtf2 PF04641 Rtf2 RING-finger 0 0 0
RTP PF02334 Replication terminator protein 1 0 7
RTP801_C PF07809 RTP801 C-terminal region 1 1 1
Rtt102p PF09510 Rtt102p-like transcription regulator protein 1 1 1
Rtt106 PF08512 Histone chaperone Rttp106-like 3 7 11
RTTN_N PF14726 Rotatin, an armadillo repeat protein, centriole functioning 0 0 0
RTX PF02382 RTX N-terminal domain 0 0 0
RtxA PF07634 RtxA repeat 0 0 0
RTX_C PF08339 RTX C-terminal domain 0 0 0
Rubella_Capsid PF05750 Rubella capsid protein 0 0 0
Rubella_E1 PF05748 Rubella membrane glycoprotein E1 0 9 4
Rubella_E2 PF05749 Rubella membrane glycoprotein E2 0 0 0
Rubis-subs-bind PF09273 Rubisco LSMT substrate-binding 2 4 10
RuBisCO_large PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 4 24 69
RuBisCO_large_N PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 4 16 58
RuBisCO_small PF00101 Ribulose bisphosphate carboxylase, small chain 3 3 43
Rubi_NSP_C PF12601 Rubivirus non-structural protein 0 0 0
Rubredoxin PF00301 Rubredoxin 1 13 70
Rubrerythrin PF02915 Rubrerythrin 2 11 31
RUN PF02759 RUN domain 3 1 6
Runt PF00853 Runt domain 2 4 12
RunxI PF08504 Runx inhibition domain 0 0 0
RusA PF05866 Endodeoxyribonuclease RusA 1 0 3
RuvA_C PF07499 RuvA, C-terminal domain 3 1 10
RuvA_N PF01330 RuvA N terminal domain 3 1 11
RuvB_C PF05491 Holliday junction DNA helicase ruvB C-terminus 3 3 10
RuvB_N PF05496 Holliday junction DNA helicase ruvB N-terminus 4 5 5
RuvC PF02075 Crossover junction endodeoxyribonuclease RuvC 1 2 3
rve PF00665 Integrase core domain 4 93 160
rve_2 PF13333 Integrase core domain 0 0 0
rve_3 PF13683 Integrase core domain 0 0 0
RVP PF00077 Retroviral aspartyl protease 5 302 628
RVP_2 PF08284 Retroviral aspartyl protease 0 0 0
RVT_1 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 5 123 221
RVT_2 PF07727 Reverse transcriptase (RNA-dependent DNA polymerase) 0 0 0
RVT_3 PF13456 Reverse transcriptase-like 2 1 4
RVT_connect PF06815 Reverse transcriptase connection domain 4 14 192
RVT_N PF13655 N-terminal domain of reverse transcriptase 0 0 0
RVT_thumb PF06817 Reverse transcriptase thumb domain 3 14 192
RWD PF05773 RWD domain 0 0 8
RWP-RK PF02042 RWP-RK domain 0 0 0
RXT2_N PF08595 RXT2-like, N-terminal 0 0 0
Rxt3 PF08642 Histone deacetylation protein Rxt3 0 0 0
RYDR_ITPR PF01365 RIH domain 2 1 16
RyR PF02026 RyR domain 1 6 8
Rz1 PF06085 Lipoprotein Rz1 precursor 0 0 0
R_equi_Vir PF05526 Rhodococcus equi virulence-associated protein 0 0 0